STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85720.1Homologs of previously reported genes of unknown function. (228 aa)    
Predicted Functional Partners:
sigC
RNA polymerase sigma-C factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.764
CCH89772.1
Homologs of previously reported genes of unknown function.
  
     0.707
CCH89344.1
Homologs of previously reported genes of unknown function.
  
     0.692
CCH88948.1
Putative metalloprotease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.690
CCH86997.1
Homologs of previously reported genes of unknown function.
  
     0.639
CCH90185.1
Homologs of previously reported genes of unknown function.
  
     0.627
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.617
CCH88923.1
Conserved protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.614
pgsA
Phosphatidylglycerophosphate synthase; Function of strongly homologous gene; enzyme.
  
     0.611
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.600
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.