STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85779.1Diguanylate phosphodiesterase, EAL domain-containing protein; Function of strongly homologous gene; enzyme. (363 aa)    
Predicted Functional Partners:
CCH87759.1
Diguanylate cyclase with PAS/PAC sensor (fragment); Function of strongly homologous gene; receptor.
 0.945
CCH88306.1
Putative Diguanylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.934
CCH89238.1
Diguanylate cyclase with PAS/PAC sensor; Function of strongly homologous gene; enzyme.
 0.876
CCH85859.1
Putative Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; receptor.
 
 0.856
CCH85669.1
Diguanylate cyclase/phosphodiesterase (fragment); Function of strongly homologous gene; enzyme.
 
  0.851
CCH85735.1
Diguanylate kinase; Function of strongly homologous gene; enzyme.
 
 0.837
CCH89663.1
Putative diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
  0.829
CCH85821.1
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
  0.826
CCH87331.1
Diguanylate cyclase (GGDEF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  0.815
CCH89092.1
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 
  0.812
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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