Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCH85829.1Transcriptional regulator, MarR family; Function of strongly homologous gene; regulator. (142 aa)    
Predicted Functional Partners:
CCH85825.1
Enoyl-CoA hydratase; Function of strongly homologous gene; enzyme.
 
   
 0.775
CCH85827.1
Putative Amidohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.721
CCH85828.1
3-oxoacyl-[acyl-carrier-protein] reductase; Function of strongly homologous gene; enzyme.
 
     0.680
fcs
Feruloyl-CoA synthetase; Function of strongly homologous gene; enzyme.
     
 0.559
CCH88368.1
Putative enoyl-CoA hydratase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.446
CCH85824.1
Homologs of previously reported genes of unknown function; Belongs to the LOG family.
       0.433
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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