STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfDFormate-dependent nitrite reductase, membrane component; Function of strongly homologous gene; enzyme. (391 aa)    
Predicted Functional Partners:
fdhB
Formate dehydrogenase, beta subunit; Function of strongly homologous gene; enzyme.
 
  
 0.957
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.939
fdhA1
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.911
selB
Selenocysteine-specific translation elongation factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
   
 0.826
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.769
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.646
CCH89101.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.443
ccmH
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
 
  
 0.425
fdhD
Formate dehydrogenase formation protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
     
 0.422
ccmF
Cytochrome c-type biogenesis protein CcmF; Function of strongly homologous gene; cell process.
  
  
 0.410
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.