STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH85909.1Glycosyl transferase, family 2; Function of strongly homologous gene; enzyme. (320 aa)    
Predicted Functional Partners:
CCH85908.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
 
 
 0.860
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.830
strM
dTDP-4-dehydrorhamnose 3,5-epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.826
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.775
rfbB-2
dTDP-D-glucose 4,6-dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.763
CCH85903.1
Exopolysaccharide xanthan biosynthesis glycosyltransferase; Function of strongly homologous gene; enzyme.
    0.744
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
  
 
 0.731
CCH89366.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
  
     0.644
CCH85907.1
Protein of unknown function; No homology to any previously reported sequences.
       0.572
CCH90099.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
  
 0.527
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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