STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CCH85915.1Polysaccharide biosynthesis protein; Function of strongly homologous gene; cell process. (517 aa)    
Predicted Functional Partners:
CCH85913.1
Putative O-antigen polymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.916
CCH85912.1
Putative polysaccharide acetyltransferase protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.851
CCH85911.1
Homologs of previously reported genes of unknown function.
  
    0.814
CCH85914.1
Exported protein of unknown function; No homology to any previously reported sequences.
       0.794
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.768
wcaJ
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.750
rkpK
UDP-glucose 6-dehydrogenase; Function of strongly homologous gene; enzyme.
  
  
 0.732
sdhC
Succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family; Function of strongly homologous gene; enzyme.
   
    0.713
rfbB-2
dTDP-D-glucose 4,6-dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.692
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.676
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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