Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH85935.1Glycosyl transferase family protein; Function of strongly homologous gene; enzyme. (315 aa)    
Predicted Functional Partners:
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
  
 
 0.731
CCH85936.1
Glycoside hydrolase family 16; Function of strongly homologous gene; enzyme.
 
   
 0.668
CCH85933.1
Glycosyl transferase group 1; Function of strongly homologous gene; enzyme.
 
    0.546
CCH85934.1
Putative acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.546
CCH85939.1
Polysaccharide biosynthesis protein; Function of strongly homologous gene; enzyme.
 
  
 0.515
CCH90099.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
  
 0.488
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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