STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85957.1Homologs of previously reported genes of unknown function. (446 aa)    
Predicted Functional Partners:
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Function of strongly homologous gene; enzyme.
  
 
 0.871
CCH85959.1
Transcriptional regulator, PadR family; Function of strongly homologous gene; regulator.
     
 0.781
CCH85956.1
Protein of unknown function; No homology to any previously reported sequences.
       0.773
CCH85955.1
Protein of unknown function; No homology to any previously reported sequences.
       0.639
CCH85960.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.576
CCH85961.1
Homologs of previously reported genes of unknown function.
       0.576
CCH86300.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
 
  0.494
CCH85687.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
  
 
 0.489
CCH85688.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; enzyme.
  
 
 0.459
CCH86301.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
  
 
 0.459
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.