STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein-releasing system ATP-binding protein LolD; Function of strongly homologous gene; enzyme. (226 aa)    
Predicted Functional Partners:
CCH85687.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 
 
 0.882
CCH85957.1
Homologs of previously reported genes of unknown function.
  
  
 0.838
CCH87592.1
Amino acid ABC transporter membrane protein (fragment).
 
 
  
 0.838
CCH85959.1
Transcriptional regulator, PadR family; Function of strongly homologous gene; regulator.
 
     0.827
CCH86300.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
 
 0.798
CCH85956.1
Protein of unknown function; No homology to any previously reported sequences.
       0.773
rpsE
30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.654
CCH85955.1
Protein of unknown function; No homology to any previously reported sequences.
       0.639
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.619
CCH86622.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
 
     0.613
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.