STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein-releasing system ATP-binding protein LolD; Function of strongly homologous gene; enzyme. (226 aa)    
Predicted Functional Partners:
CCH85687.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
  
 0.899
CCH85957.1
Homologs of previously reported genes of unknown function.
  
 
 0.871
CCH87592.1
Amino acid ABC transporter membrane protein (fragment).
 
 
 
 0.859
CCH85959.1
Transcriptional regulator, PadR family; Function of strongly homologous gene; regulator.
 
   
 0.829
CCH85956.1
Protein of unknown function; No homology to any previously reported sequences.
       0.773
CCH86300.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
 0.686
rpsE
30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.651
CCH85955.1
Protein of unknown function; No homology to any previously reported sequences.
       0.639
CCH86622.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
  
  
  0.633
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.621
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.