STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85988.1Homologs of previously reported genes of unknown function. (552 aa)    
Predicted Functional Partners:
CCH86437.1
Mg-chelatase; Function of strongly homologous gene; enzyme.
 
 
 0.637
chlD
Cobaltochelatase subunit; Function of strongly homologous gene; transporter.
  
 
 0.591
CCH87962.1
Anti-sigma regulatory factor, serine/threonine protein kinase; Function of strongly homologous gene; factor.
  
     0.542
CCH88592.1
Homologs of previously reported genes of unknown function.
  
     0.501
CCH85989.1
UDP-glucuronate decarboxylase; Function of strongly homologous gene; enzyme.
       0.499
CCH88308.1
Two component signal transduction serine/threonine kinase; Function of strongly homologous gene; regulator.
  
     0.493
CCH87688.1
Homologs of previously reported genes of unknown function.
  
     0.489
CCH89211.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); Function of strongly homologous gene; regulator.
  
     0.486
CCH85679.1
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.477
CCH88092.1
Beta-lactamase; Function of strongly homologous gene; enzyme.
 
     0.454
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.