STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86006.1Serine/threonine-protein kinase pksC; Function of strongly homologous gene; enzyme. (560 aa)    
Predicted Functional Partners:
pstP
Serine/threonine protein phosphatase; Function of strongly homologous gene; enzyme.
 
 
 0.851
pstP-2
PP2C-family Ser/Thr phosphatase (fragment); Function of strongly homologous gene; enzyme.
 
 
 0.851
CCH88099.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.804
CCH85501.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.684
CCH86007.1
Homologs of previously reported genes of unknown function.
       0.664
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.631
CCH90951.1
Homologs of previously reported genes of unknown function.
  
     0.626
spk
Two-component serine/threonine-protein kinase PK-1; Function of strongly homologous gene; enzyme.
 
 
0.623
pknB
Two component serine/threonine-protein kinase with PASTA sensor; Function of strongly homologous gene; enzyme.
 
 
0.618
CCH85500.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.586
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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