STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86059.1Thiol-disulfide isomerase-like thioredoxin; Function of strongly homologous gene; carrier. (196 aa)    
Predicted Functional Partners:
CCH86060.1
NUDIX hydrolase; Function of strongly homologous gene; enzyme.
  
  0.926
msrA
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.827
CCH86062.1
Trypsin-like serine protease with C-terminal PDZ domain; Function of strongly homologous gene; enzyme.
   
 
 0.821
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
    0.806
CCH87044.1
Thioredoxin of cytochrome c-type biogenesis; Function of strongly homologous gene; cell process.
  
     0.775
CCH86061.1
Protein of unknown function; No homology to any previously reported sequences.
       0.773
CCH90368.1
Cytochrome c biogenesis protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.766
CCH87052.1
Cytochrome c-type biogenesis protein CcdA; Function of strongly homologous gene; enzyme.
 
  
 0.757
CCH87384.1
Cytochrome c biogenesis protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.757
CCH87521.1
Homologs of previously reported genes of unknown function.
   
 0.635
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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