STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86071.1Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator. (86 aa)    
Predicted Functional Partners:
CCH86072.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
     0.936
CCH88017.1
Homologs of previously reported genes of unknown function.
   
 
 0.923
CCH86073.1
ABC transporter, ATPase component; Function of strongly homologous gene; transporter.
 
     0.918
hflX
Putative GTP-binding transporter; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.497
cbiN
Cobalt transport protein cbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
  
    0.425
cysG
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
       0.416
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
       0.416
CCH86076.1
Putative Threonine-phosphate decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.416
cbiO
Membrane associated cobalt transport protein CbiO, ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
       0.416
cbiQ
Cobalt ABC transporter, permease protein CbiQ; Function of strongly homologous gene; transporter.
       0.416
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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