STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86089.1Uncharacterized protein; Homologs of previously reported genes of unknown function. (205 aa)    
Predicted Functional Partners:
CCH85573.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
   
    0.757
CCH89701.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
   
    0.757
CCH86090.1
Protein of unknown function; No homology to any previously reported sequences.
       0.572
CCH86110.1
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.501
CCH86109.1
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.496
CCH90603.1
Homologs of previously reported genes of unknown function.
  
     0.492
CCH86811.1
Homologs of previously reported genes of unknown function.
  
     0.430
CCH86607.1
Homologs of previously reported genes of unknown function.
  
     0.410
CCH90062.1
Pyridoxamine 5'-phosphate oxidase-related FMN-binding; Function of strongly homologous gene; transporter.
  
     0.408
CCH85532.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
   
    0.406
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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