STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86109.1Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (566 aa)    
Predicted Functional Partners:
CCH86110.1
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
0.887
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Function of strongly homologous gene; enzyme; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.695
CCH87270.1
Ribonuclease II; Function of strongly homologous gene; enzyme.
  
  
 0.564
cmk
Cytidylate kinase; Function of strongly homologous gene; enzyme.
  
  
 0.562
CCH86108.1
Homologs of previously reported genes of unknown function.
       0.561
dnaG
DNA primase; Function of strongly homologous gene; enzyme.
  
    0.541
dnaG-3
DNA primase; Function of strongly homologous gene; enzyme.
  
    0.541
dnaG-4
DNA primase; Function of strongly homologous gene; enzyme.
  
    0.541
dnaG-2
DNA primase (modular protein); RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.
   
    0.527
typA
GTP-binding protein typA/bipA homolog; Function of strongly homologous gene; enzyme.
  
  
 0.522
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.