STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86116.1Conserved protein of unknown function, putative Tetratricopeptide domain; Homologs of previously reported genes of unknown function. (113 aa)    
Predicted Functional Partners:
CCH87551.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.757
CCH87296.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.732
CCH87863.1
Homologs of previously reported genes of unknown function.
   
 
 0.641
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
     0.628
CCH87500.1
Homologs of previously reported genes of unknown function.
  
     0.578
CCH87504.1
Putative anti-sigma regulatory factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
     0.520
CCH86115.1
Homologs of previously reported genes of unknown function.
       0.510
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
       0.497
CCH90409.1
Homologs of previously reported genes of unknown function.
  
     0.466
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.446
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.