STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnuTGluconate permease; Function of strongly homologous gene; transporter. (485 aa)    
Predicted Functional Partners:
CCH86882.1
Gluconokinase; Function of strongly homologous gene; enzyme.
 
  
 0.780
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
     
 0.700
gndA
6-phosphogluconate dehydrogenase (Decarboxylating); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.647
glxK
Glycerate kinase; Function of strongly homologous gene; enzyme; Belongs to the glycerate kinase type-1 family.
 
  
 0.622
CCH88479.1
Carbohydrate kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
 
  
 0.619
xylB-3
Xylulose kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
  
  
 0.545
CCH86117.1
Homologs of previously reported genes of unknown function.
 
     0.537
CCH86119.1
Glycoside hydrolase family 43 (modular protein); Function of strongly homologous gene; enzyme.
       0.508
CCH90221.1
Homologs of previously reported genes of unknown function.
 
      0.468
glpF-2
Glycerol uptake facilitator protein; Function of strongly homologous gene; transporter; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
   
 0.420
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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