STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86134.1Type II secretion system F domain protein; Function of strongly homologous gene; cell process. (248 aa)    
Predicted Functional Partners:
CCH86133.1
Putative Flp pilus assembly protein TadB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
 
 0.983
CCH86132.1
Putative conjugal transfer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
 
 
 0.922
CCH86131.1
Septum site determining protein; Function of strongly homologous gene; cell process.
 
     0.861
CCH87118.1
Type II secretion system F domain protein; Function of strongly homologous gene; cell process.
  
 
 0.809
CCH89222.1
Flp pilus assembly protein TadB; Function of strongly homologous gene; cell process.
  
 
 0.809
flpE
Pilus assembly protein ATPase; Function of strongly homologous gene; cell process.
 
 
 0.784
CCH86371.1
Flp pilus assembly protein CpaB, SAF domain; Function of strongly homologous gene; cell process.
 
 
 0.782
CCH86665.1
Type II secretion system protein TadB; Function of strongly homologous gene; transporter.
  
 
 0.749
CCH86779.1
Homologs of previously reported genes of unknown function.
 
 
 0.742
CCH87117.1
Flp pilus assembly protein, ATPase CpaF; Function of strongly homologous gene; cell process.
 
 
 0.668
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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