STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86135.1Homologs of previously reported genes of unknown function. (60 aa)    
Predicted Functional Partners:
CCH86136.1
Homologs of previously reported genes of unknown function.
     
 0.813
CCH86133.1
Putative Flp pilus assembly protein TadB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
     
 0.751
CCH86129.1
Homologs of previously reported genes of unknown function.
 
     0.614
CCH86131.1
Septum site determining protein; Function of strongly homologous gene; cell process.
       0.612
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.569
CCH86132.1
Putative conjugal transfer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
     
 0.555
CCH88776.1
Homologs of previously reported genes of unknown function.
  
     0.545
CCH86130.1
Inhibition of morphological differentiation protein; Function of strongly homologous gene; cell process.
       0.526
CCH86134.1
Type II secretion system F domain protein; Function of strongly homologous gene; cell process.
       0.494
CCH90074.1
Putative phospho-glucose isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.484
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.