STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase, serine-type (modular protein); Function of strongly homologous gene; enzyme. (754 aa)    
Predicted Functional Partners:
dacD
Protein of unknown function; Gene remnant; Belongs to the peptidase S11 family.
     
 0.968
CCH86176.1
Homologs of previously reported genes of unknown function.
 
  
 0.905
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
   
 0.838
hpt
Hypoxanthine-guanine phosphoribosyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.798
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.678
pbpA
Peptidoglycan glycosyltransferase, penicillin-binding protein A; Function of strongly homologous gene; enzyme.
      
 0.605
ponA
Membrane carboxypeptidase (Penicillin-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
   
 0.604
CCH90939.1
Peptidoglycan glycosyltransferase (Penicillin-binding protein); Function of strongly homologous gene; enzyme.
      
 0.598
pbpA-2
Penicillin-binding protein; Function of strongly homologous gene; cell process.
  
   
 0.562
CCH86891.1
Homologs of previously reported genes of unknown function.
     
 0.555
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.