STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86187.1ABC-type proline/glycine betaine transport system, permease component; Function of strongly homologous gene; transporter. (240 aa)    
Predicted Functional Partners:
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein opuCA; Function of strongly homologous gene; transporter.
 0.997
CCH86186.1
ABC-type proline/glycine betaine transport system, permease component; Function of strongly homologous gene; transporter.
 
 
0.996
CCH87735.1
Osmoprotectant transport system substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.994
CCH86188.1
Osmoprotectant transport system substrate-binding protein; Function of strongly homologous gene; transporter.
 
 0.993
opuAA
Glycine betaine transport ATP-binding protein opuAA; Function of strongly homologous gene; enzyme.
  
 0.768
CCH88142.1
Substrate-binding region of ABC-type glycine betaine transport system.
 
  
 0.609
msrB
Peptide methionine sulfoxide reductase msrB; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the MsrB Met sulfoxide reductase family.
 
  
 0.406
CCH86244.1
ABC-type proline/glycine betaine transport permease; Function of strongly homologous gene; transporter.
  
     0.405
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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