STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86209.1Deoxyribodipyrimidine photolyase-related protein; Function of strongly homologous gene; enzyme. (525 aa)    
Predicted Functional Partners:
phr
Deoxyribodipyrimidine photo-lyase; Function of strongly homologous gene; enzyme; Belongs to the DNA photolyase family.
 
   
 0.701
CCH88965.1
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.550
CCH88963.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
      0.545
CCH86208.1
Homologs of previously reported genes of unknown function.
       0.543
CCH90617.1
Homologs of previously reported genes of unknown function.
 
     0.484
CCH90666.1
Homologs of previously reported genes of unknown function.
  
     0.436
CCH86858.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.420
radA
DNA repair protein radA homolog; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.403
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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