STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86230.1ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter. (959 aa)    
Predicted Functional Partners:
CCH86231.1
Putative ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.964
CCH88904.1
ABC transporter membrane protein; Function of strongly homologous gene; transporter.
 
 
 0.700
CCH86229.1
Protein of unknown function; No homology to any previously reported sequences.
       0.620
CCH90015.1
Homologs of previously reported genes of unknown function.
  
     0.577
CCH86228.1
Homologs of previously reported genes of unknown function.
       0.562
CCH88856.1
Homologs of previously reported genes of unknown function.
  
     0.562
CCH86225.1
Homologs of previously reported genes of unknown function.
 
     0.545
CCH89955.1
Peptidase S26A, superoxide dismutase maturation protease, nickel-type; Function of strongly homologous gene; enzyme.
  
    0.539
CCH88931.1
Polyketide cyclase / dehydrase family protein; Function of strongly homologous gene; enzyme.
  
     0.504
CCH86140.1
Homologs of previously reported genes of unknown function.
 
    0.466
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.