STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH86231.1Putative ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (285 aa)    
Predicted Functional Partners:
CCH86230.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
 
 0.966
CCH88905.1
ABC transporter; Function of strongly homologous gene; transporter.
 
 0.655
CCH88906.1
Sigma E regulatory protein, MucB/RseB; Function of strongly homologous gene; regulator.
 
     0.626
CCH86229.1
Protein of unknown function; No homology to any previously reported sequences.
       0.620
CCH86228.1
Homologs of previously reported genes of unknown function.
       0.562
CCH89950.1
Homologs of previously reported genes of unknown function.
 
 0.504
CCH88856.1
Homologs of previously reported genes of unknown function.
 
     0.497
CCH88931.1
Polyketide cyclase / dehydrase family protein; Function of strongly homologous gene; enzyme.
 
     0.476
CCH89949.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
 
 0.472
CCH86225.1
Homologs of previously reported genes of unknown function.
 
     0.455
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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