STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86243.1Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator. (199 aa)    
Predicted Functional Partners:
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
  
  
 0.784
CCH86244.1
ABC-type proline/glycine betaine transport permease; Function of strongly homologous gene; transporter.
 
  
 0.625
CCH86242.1
2OG-Fe(II) oxygenase; Function of strongly homologous gene; enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.594
CCH86940.1
Homologs of previously reported genes of unknown function.
 
    0.561
CCH86268.1
Homologs of previously reported genes of unknown function.
 
    0.558
CCH86933.1
FAD/FMN-dependent dehydrogenase; Function of strongly homologous gene; enzyme.
 
   
 0.512
CCH89592.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
 
 
0.442
CCH86241.1
Homologs of previously reported genes of unknown function.
       0.437
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.434
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.433
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.