STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86244.1ABC-type proline/glycine betaine transport permease; Function of strongly homologous gene; transporter. (211 aa)    
Predicted Functional Partners:
CCH86937.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
  
 0.917
CCH86940.1
Homologs of previously reported genes of unknown function.
 
  
 0.885
CCH86268.1
Homologs of previously reported genes of unknown function.
 
  
 0.871
CCH89559.1
ABC transporter (ATP binding protein)(tauB-like); Function of strongly homologous gene; transporter.
  
 0.721
CCH86933.1
FAD/FMN-dependent dehydrogenase; Function of strongly homologous gene; enzyme.
 
     0.661
codA
Cytosine deaminase; Function of strongly homologous gene; enzyme.
    0.653
CCH86943.1
Putative FAD/FMN-containing dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.641
CCH86243.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
 
  
 0.625
CCH89557.1
ABC-type nitrate/sulfonate/bicarbonate transport system, extracellular component; Function of strongly homologous gene; transporter.
 
  
 0.600
CCH86948.1
Putative creatinine amidohydrolase (Creatininase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.541
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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