cspC protein (Modestobacter marinus) - STRING interaction network

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[Homology]

Score

cspC

Cold shock-like protein CspC; Function of strongly homologous gene; factor. (127 aa)

Predicted Functional Partners:

CCH85999.1

0.700

rplW

0.614

rpsQ

0.608

rpsL

0.607

rpmC

0.566

rpsS

0.566

rplV

0.559

hppA

0.546

rpsE

0.544

rplX

0.533

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH85999.1	cspC	MODMU_0542	MODMU_0835	Prephenate dehydrogenase; Function of strongly homologous gene; enzyme.	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	0.700
cspC	CCH85999.1	MODMU_0835	MODMU_0542	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	Prephenate dehydrogenase; Function of strongly homologous gene; enzyme.	0.700
cspC	hppA	MODMU_0835	MODMU_0681	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	Pyrophosphate-energized proton pump; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.	0.546
cspC	rplV	MODMU_0835	MODMU_4914	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.559
cspC	rplW	MODMU_0835	MODMU_4917	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.614
cspC	rplX	MODMU_0835	MODMU_4908	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	50S ribosomal subunit protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.533
cspC	rpmC	MODMU_0835	MODMU_4911	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	50S ribosomal protein L29; Function of strongly homologous gene; structure; Belongs to the universal ribosomal protein uL29 family.	0.566
cspC	rpsE	MODMU_0835	MODMU_4902	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.544
cspC	rpsL	MODMU_0835	MODMU_4924	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.607
cspC	rpsQ	MODMU_0835	MODMU_4910	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.608
cspC	rpsS	MODMU_0835	MODMU_4915	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.566
hppA	cspC	MODMU_0681	MODMU_0835	Pyrophosphate-energized proton pump; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	0.546
rplV	cspC	MODMU_4914	MODMU_0835	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Cold shock-like protein CspC; Function of strongly homologous gene; factor.	0.559
rplV	rplW	MODMU_4914	MODMU_4917	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplV	rplX	MODMU_4914	MODMU_4908	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	50S ribosomal subunit protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplV	rpmC	MODMU_4914	MODMU_4911	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	50S ribosomal protein L29; Function of strongly homologous gene; structure; Belongs to the universal ribosomal protein uL29 family.	0.999
rplV	rpsE	MODMU_4914	MODMU_4902	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.997
rplV	rpsL	MODMU_4914	MODMU_4924	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.997
rplV	rpsQ	MODMU_4914	MODMU_4910	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rplV	rpsS	MODMU_4914	MODMU_4915	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999