STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86292.1Transcriptional regulator, MarR family; Function of strongly homologous gene; regulator. (144 aa)    
Predicted Functional Partners:
CCH86293.1
Major facilitator superfamily MFS_1; Function of strongly homologous gene; transporter.
     0.891
CCH86311.1
tRNA/rRNA methyltransferase; Function of strongly homologous gene; enzyme.
      0.681
CCH86291.1
Xanthine/uracil/vitamin C permease; Function of strongly homologous gene; transporter.
     
 0.583
CCH86294.1
Homologs of previously reported genes of unknown function.
       0.502
CCH86295.1
2'-5' RNA ligase; Function of strongly homologous gene; enzyme.
       0.449
CCH86296.1
RNA ligase (fragment); Function of strongly homologous gene; enzyme.
       0.449
CCH86290.1
Homologs of previously reported genes of unknown function.
       0.405
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.