STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86300.1Membrane protein of unknown function; No homology to any previously reported sequences. (881 aa)    
Predicted Functional Partners:
CCH86301.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
  
 0.925
CCH86302.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
  
 0.925
CCH86303.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
       0.763
CCH85688.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; enzyme.
  
 0.686
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Function of strongly homologous gene; enzyme.
  
 0.686
CCH90833.1
Putative ABC-type transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 0.686
pheT
Phenylalanyl-tRNA synthetase beta chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.590
CCH86304.1
ABC efflux pump, inner membrane subunit, DrrB family; Function of strongly homologous gene; transporter.
     
 0.583
CCH86305.1
ABC transporter; Function of strongly homologous gene; transporter.
       0.576
CCH87712.1
HNH endonuclease (fragment); Function of strongly homologous gene; enzyme.
  
 
 0.564
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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