STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86301.1Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter. (228 aa)    
Predicted Functional Partners:
CCH86300.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
 0.925
CCH85687.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
  
 0.899
CCH86302.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
    
0.821
CCH86303.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
   
   0.770
CCH87592.1
Amino acid ABC transporter membrane protein (fragment).
 
 
 
 0.769
CCH87801.1
Putative ABC transport system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
  0.754
CCH89252.1
ABC transporter; Function of strongly homologous gene; transporter.
  
  
  0.690
rpsE
30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.663
CCH89949.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
  
  
  0.661
CCH86305.1
ABC transporter; Function of strongly homologous gene; transporter.
 
  
 
0.655
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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