STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86303.1Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator. (189 aa)    
Predicted Functional Partners:
CCH86301.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
   
   0.778
CCH86302.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
   
   0.778
CCH86300.1
Membrane protein of unknown function; No homology to any previously reported sequences.
     
 0.768
CCH86304.1
ABC efflux pump, inner membrane subunit, DrrB family; Function of strongly homologous gene; transporter.
 
     0.725
CCH86305.1
ABC transporter; Function of strongly homologous gene; transporter.
 
     0.674
CCH86299.1
Putative phosphoribosyltransferase protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.538
CCH86306.1
Diguanylate kinase; Function of strongly homologous gene; enzyme.
  
    0.423
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.