STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86307.1Homologs of previously reported genes of unknown function. (347 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.652
CCH86308.1
NAD/FAD-dependent oxidoreductase; Function of strongly homologous gene; enzyme.
       0.623
CCH86336.1
ABC-type Na+ efflux pump, permease component; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
  0.524
CCH86304.1
ABC efflux pump, inner membrane subunit, DrrB family; Function of strongly homologous gene; transporter.
  
 
  0.508
CCH86306.1
Diguanylate kinase; Function of strongly homologous gene; enzyme.
       0.501
CCH86309.1
Homologs of previously reported genes of unknown function.
       0.445
CCH86310.1
Homologs of previously reported genes of unknown function.
       0.445
CCH86305.1
ABC transporter; Function of strongly homologous gene; transporter.
    
  0.436
CCH88716.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; enzyme.
  
     0.401
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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