STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86308.1NAD/FAD-dependent oxidoreductase; Function of strongly homologous gene; enzyme. (315 aa)    
Predicted Functional Partners:
chlD
Cobaltochelatase subunit; Function of strongly homologous gene; transporter.
  
  
  0.760
CCH88965.1
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.658
CCH86307.1
Homologs of previously reported genes of unknown function.
       0.623
CCH86309.1
Homologs of previously reported genes of unknown function.
       0.541
CCH86310.1
Homologs of previously reported genes of unknown function.
       0.541
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.500
CCH88846.1
Peptidase S16, lon domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.476
pgsA
Phosphatidylglycerophosphate synthase; Function of strongly homologous gene; enzyme.
  
     0.429
CCH88898.1
Homologs of previously reported genes of unknown function.
 
     0.427
CCH86306.1
Diguanylate kinase; Function of strongly homologous gene; enzyme.
       0.415
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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