STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86358.1Transcriptional regulator, DeoR family; Function of strongly homologous gene; regulator. (262 aa)    
Predicted Functional Partners:
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
 
  
 0.964
fruK
1-phosphofructokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.857
CCH89355.1
Acetate--CoA ligase (NDP forming); Function of strongly homologous gene; enzyme.
    
   0.606
CCH86357.1
Sugar uptake ABC transporter solute-binding protein; Function of strongly homologous gene; transporter.
  
  
 0.507
CCH86359.1
Homologs of previously reported genes of unknown function.
       0.494
glpD-2
Glycerol-3-phosphate dehydrogenase 2; Function of strongly homologous gene; enzyme; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.439
glpD
Glycerol-3-phosphate dehydrogenase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.427
ptsI
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
  
 0.412
mtlA
PTS system mannitol-specific EIICBA component [Includes: Mannitol permease IIC component; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
   
 0.411
CCH86353.1
Aldose 1-epimerase; Function of strongly homologous gene; enzyme.
     
 0.404
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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