STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86418.1Capsular exopolysaccharide family; Function of strongly homologous gene; enzyme. (399 aa)    
Predicted Functional Partners:
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.888
CCH86419.1
Protein of unknown function; No homology to any previously reported sequences.
       0.773
wcaJ
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.734
wcaJ-3
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.729
CCH88118.1
Non-specific protein-tyrosine kinase; Function of strongly homologous gene; enzyme.
 
0.683
epsL
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.677
CCH85938.1
Lipopolysaccharide biosynthesis protein; Function of strongly homologous gene; enzyme.
 
0.675
tagD
Glycerol-3-phosphate cytidyltransferase; Function of strongly homologous gene; enzyme.
 
     0.605
mrp
Antiporter; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.550
CCH88119.1
dTDP-glucose 4,6-dehydratase, polysaccharide biosynthesis protein CapD; Function of strongly homologous gene; enzyme.
 
  
 0.500
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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