STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86450.1Geranylgeranyl reductase family protein (fragment); Function of strongly homologous gene; enzyme. (299 aa)    
Predicted Functional Partners:
CCH86449.1
Protein of unknown function; No homology to any previously reported sequences.
     0.994
etfB
Electron transfer flavoprotein subunit beta; Function of strongly homologous gene; carrier.
  
 
 0.631
CCH86448.1
Homologs of previously reported genes of unknown function.
 
     0.591
CCH89732.1
Anti-sigma factor; Function of strongly homologous gene; factor.
   
  
 0.544
CCH87016.1
Regulatory protein (modular protein).
  
     0.537
prcA
20S proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.
  
   
 0.496
prcB
Proteasome endopeptidase complex, beta component; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.
  
   
 0.476
etfA
Electron transfer flavoprotein alpha subunit; Function of strongly homologous gene; carrier.
  
 
 0.460
CCH85545.1
Homologs of previously reported genes of unknown function.
  
     0.446
CCH90581.1
Naringenin-chalcone synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.435
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.