STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH86453.1Homologs of previously reported genes of unknown function. (405 aa)    
Predicted Functional Partners:
CCH86454.1
Homologs of previously reported genes of unknown function.
       0.773
CCH86190.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.692
CCH90185.1
Homologs of previously reported genes of unknown function.
  
     0.647
ispU
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.637
CCH86455.1
Transcriptional regulator, PadR family; Function of strongly homologous gene; regulator.
       0.610
CCH90524.1
Homologs of previously reported genes of unknown function.
  
     0.606
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.600
CCH88071.1
Homologs of previously reported genes of unknown function.
  
     0.590
CCH89745.1
Homologs of previously reported genes of unknown function.
  
     0.571
CCH90438.1
Homologs of previously reported genes of unknown function.
  
     0.543
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.