STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86455.1Transcriptional regulator, PadR family; Function of strongly homologous gene; regulator. (203 aa)    
Predicted Functional Partners:
CCH86457.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
     0.818
CCH86456.1
ABC-type transport system, ATP-binding protein; Function of strongly homologous gene; enzyme.
 
    0.716
CCH86453.1
Homologs of previously reported genes of unknown function.
       0.610
CCH86454.1
Homologs of previously reported genes of unknown function.
       0.610
CCH89666.1
Homologs of previously reported genes of unknown function.
 
     0.558
ispU
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.518
CCH87568.1
Homologs of previously reported genes of unknown function.
  
     0.431
CCH85815.1
Homologs of previously reported genes of unknown function.
 
     0.413
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.