STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86458.1Putative phosphate starvation-inducible protein, ATP-binding PhoH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (431 aa)    
Predicted Functional Partners:
dusB
tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.514
ispU
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.474
rbpA-2
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.434
CCH86451.1
Putative channel protein, hemolysin III family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.431
CCH86456.1
ABC-type transport system, ATP-binding protein; Function of strongly homologous gene; enzyme.
       0.425
CCH86457.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
       0.425
CCH86453.1
Homologs of previously reported genes of unknown function.
       0.420
CCH87087.1
Putative cytochrome c biogenesis membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.412
CCH90864.1
Fatty acid desaturase; Function of strongly homologous gene; enzyme.
     
 0.410
CCH90367.1
ResB protein required for cytochrome c biosynthesis; Function of strongly homologous gene; cell process.
  
     0.409
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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