STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86505.1Homologs of previously reported genes of unknown function. (229 aa)    
Predicted Functional Partners:
CCH85502.1
Homologs of previously reported genes of unknown function.
  
     0.774
CCH86504.1
Homologs of previously reported genes of unknown function.
       0.636
CCH86503.1
Homologs of previously reported genes of unknown function.
       0.570
CCH87846.1
HTH-type transcriptional regulator; Function of strongly homologous gene; factor.
 
    0.564
CCH87411.1
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
     0.536
CCH89739.1
Homologs of previously reported genes of unknown function.
  
  
 0.503
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
  
  
 0.488
MODMU_0288
Putative HAD superfamily hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.482
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.474
nrdJ
Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.471
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.