STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86519.1Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (232 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.754
CCH86027.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
     0.630
CCH86520.1
ABC transporter, ATPase; Function of strongly homologous gene; enzyme.
 
     0.601
CCH89146.1
Transcription regulator, TetR family; Function of strongly homologous gene; factor.
  
     0.580
CCH88976.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
 
  0.552
CCH86521.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
       0.545
liaS
Two component signal transduction histidine kinase involved in sensing cell wall stress response; Function of strongly homologous gene; enzyme.
       0.545
liaR
Two component transcriptional regulator liaR; Function of strongly homologous gene; regulator.
       0.545
CCH86516.1
Methylated-DNA/protein-cysteine methyltransferase; Function of strongly homologous gene; enzyme.
       0.528
ada
Transcriptional regulator, Ada family; Function of strongly homologous gene; factor.
       0.528
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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