STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86520.1ABC transporter, ATPase; Function of strongly homologous gene; enzyme. (299 aa)    
Predicted Functional Partners:
CCH86521.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
  0.955
CCH89949.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
 
    
0.850
CCH90188.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
  0.833
liaS
Two component signal transduction histidine kinase involved in sensing cell wall stress response; Function of strongly homologous gene; enzyme.
       0.773
liaR
Two component transcriptional regulator liaR; Function of strongly homologous gene; regulator.
       0.773
CCH86457.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
 
  0.723
CCH90774.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
 
 0.689
CCH88806.1
ABC-type branched-chain amino acid transport systems, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
  
 
0.661
CCH90833.1
Putative ABC-type transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
  0.651
CCH89370.1
ABC-2 type transporter (modular protein); Function of strongly homologous gene; transporter.
 
 
 0.630
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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