STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86574.1Transcriptional regulator, Rrf2 family; Function of strongly homologous gene; regulator. (157 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase; Function of strongly homologous gene; enzyme.
  
  
 0.859
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
  
  
 0.733
CCH86575.1
NUDIX hydrolase; Function of strongly homologous gene; enzyme.
 
     0.617
CCH87514.1
Oxidoreductase FAD-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the globin family.
     
 0.608
sir
Sulfite reductase [ferredoxin]; Function of strongly homologous gene; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
    0.554
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
 
  
 0.550
CCH86576.1
Homologs of previously reported genes of unknown function.
 
     0.505
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
  
 0.504
CCH86729.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.496
pobB
Phenoxybenzoate dioxygenase subunit beta; Function of strongly homologous gene; enzyme.
  
  
 0.480
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.