CCH86587.1 protein (Modestobacter marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH86587.1

GCN5-related N-acetyltransferase. (250 aa)

Predicted Functional Partners:

argJ

0.798

argH

0.780

argF

0.776

argB

0.762

ureC

0.756

ureA

0.747

asp

0.747

dapE

0.742

gdh

0.742

ureB

0.741

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH86587.1	argB	MODMU_1137	MODMU_3214	GCN5-related N-acetyltransferase.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.762
CCH86587.1	argF	MODMU_1137	MODMU_3212	GCN5-related N-acetyltransferase.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.776
CCH86587.1	argH	MODMU_1137	MODMU_3210	GCN5-related N-acetyltransferase.	Argininosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.780
CCH86587.1	argJ	MODMU_1137	MODMU_3215	GCN5-related N-acetyltransferase.	Bifunctional protein argJ [Includes: Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.798
CCH86587.1	asp	MODMU_1137	MODMU_4938	GCN5-related N-acetyltransferase.	Aspartate aminotransferase; Function of strongly homologous gene; enzyme.	0.747
CCH86587.1	dapE	MODMU_1137	MODMU_1147	GCN5-related N-acetyltransferase.	Succinyl-diaminopimelate desuccinylase; Function of strongly homologous gene; enzyme.	0.742
CCH86587.1	gdh	MODMU_1137	MODMU_5503	GCN5-related N-acetyltransferase.	Glutamate dehydrogenase (NAD); Function of strongly homologous gene; enzyme.	0.742
CCH86587.1	ureA	MODMU_1137	MODMU_0197	GCN5-related N-acetyltransferase.	Urease subunit gamma; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease gamma subunit family.	0.747
CCH86587.1	ureB	MODMU_1137	MODMU_0198	GCN5-related N-acetyltransferase.	Urease beta subunit (modular protein); Function of strongly homologous gene; enzyme.	0.741
CCH86587.1	ureC	MODMU_1137	MODMU_0199	GCN5-related N-acetyltransferase.	Urease alpha subunit (Urea amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.756
argB	CCH86587.1	MODMU_3214	MODMU_1137	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	GCN5-related N-acetyltransferase.	0.762
argB	argF	MODMU_3214	MODMU_3212	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.997
argB	argH	MODMU_3214	MODMU_3210	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Argininosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.995
argB	argJ	MODMU_3214	MODMU_3215	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Bifunctional protein argJ [Includes: Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.999
argB	dapE	MODMU_3214	MODMU_1147	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Succinyl-diaminopimelate desuccinylase; Function of strongly homologous gene; enzyme.	0.786
argB	gdh	MODMU_3214	MODMU_5503	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Glutamate dehydrogenase (NAD); Function of strongly homologous gene; enzyme.	0.421
argF	CCH86587.1	MODMU_3212	MODMU_1137	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	GCN5-related N-acetyltransferase.	0.776
argF	argB	MODMU_3212	MODMU_3214	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.997
argF	argH	MODMU_3212	MODMU_3210	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.997
argF	argJ	MODMU_3212	MODMU_3215	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Bifunctional protein argJ [Includes: Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.999