STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86594.1Homologs of previously reported genes of unknown function. (262 aa)    
Predicted Functional Partners:
lsr
Histone-like DNA-binding regulator lsr2; Function of strongly homologous gene; factor.
  
     0.619
CCH89214.1
Putative lysyl tRNA synthetase-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.587
rbpA-2
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.584
dapE
Succinyl-diaminopimelate desuccinylase; Function of strongly homologous gene; enzyme.
 
     0.551
CCH87029.1
Cell wall-associated hydrolase; Function of strongly homologous gene; enzyme.
 
 
  
 0.549
CCH87262.1
Homologs of previously reported genes of unknown function.
  
     0.525
CCH86595.1
Alpha/beta hydrolase; Function of strongly homologous gene; enzyme.
       0.482
MODMU_4496
Fragment of HNH endonuclease (part 1); Function of strongly homologous gene; enzyme.
  
     0.482
CCH89471.1
Homologs of previously reported genes of unknown function.
 
 
  
 0.465
CCH90321.1
Acyl dehydratase; Function of strongly homologous gene; enzyme; Belongs to the UPF0336 family.
  
     0.445
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.