STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86600.1Polyketide cyclase; Function of strongly homologous gene; enzyme. (144 aa)    
Predicted Functional Partners:
CCH86598.1
Homologs of previously reported genes of unknown function; Belongs to the LOG family.
       0.764
dapE
Succinyl-diaminopimelate desuccinylase; Function of strongly homologous gene; enzyme.
       0.725
CCH86599.1
Cell division initiation protein DivIVA; Function of strongly homologous gene; cell process.
       0.724
CCH90639.1
Homologs of previously reported genes of unknown function.
  
     0.556
CCH90015.1
Homologs of previously reported genes of unknown function.
  
     0.535
CCH89766.1
Homologs of previously reported genes of unknown function.
  
     0.525
CCH88856.1
Homologs of previously reported genes of unknown function.
  
     0.524
dapD
Tetrahydrodipicolinate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
       0.523
CCH88740.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
     0.504
CCH87304.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.460
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.