STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nthAFragment of Nitrile hydratase subunit beta (Nitrilase) (NHase) (part 2); Function of strongly homologous gene; enzyme. (196 aa)    
Predicted Functional Partners:
amdA
Amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the amidase family.
 
  
  0.920
CCH90871.1
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; Function of strongly homologous gene; enzyme; Belongs to the amidase family.
 
  
  0.848
amiB
Amidase amiB2; Function of strongly homologous gene; enzyme; Belongs to the amidase family.
    
  0.815
CCH90662.1
Putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the amidase family.
    
  0.694
CCH87564.1
Putative secreted amidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
    
  0.688
amiD
Amidase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the amidase family.
    
  0.688
zhuL
Enantiomer selective amidase.
 
  
  0.675
amiB-2
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; Function of strongly homologous gene; enzyme.
    
  0.648
CCH90716.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Function of strongly homologous gene; enzyme.
     
 0.645
CCH90718.1
Homologs of previously reported genes of unknown function.
     
 0.645
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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