STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH86635.1Homologs of previously reported genes of unknown function. (199 aa)    
Predicted Functional Partners:
rpoE
RNA polymerase, sigma subunit, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.848
CCH86225.1
Homologs of previously reported genes of unknown function.
 
   0.801
CCH87831.1
Homologs of previously reported genes of unknown function.
 
   0.800
CCH90185.1
Homologs of previously reported genes of unknown function.
  
     0.775
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.772
CCH90524.1
Homologs of previously reported genes of unknown function.
  
     0.769
CCH86511.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.768
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.767
CCH86001.1
Homologs of previously reported genes of unknown function.
  
     0.764
CCH86190.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.764
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.