Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH86666.1Type II secretion system F protein; Function of strongly homologous gene; cell process. (306 aa)    
Predicted Functional Partners:
CCH86665.1
Type II secretion system protein TadB; Function of strongly homologous gene; transporter.
 
  
  0.987
CCH86664.1
Type II secretion system protein E; Function of strongly homologous gene; cell process.
 
 
 0.953
CCH86776.1
Type II secretion system F domain protein; Function of strongly homologous gene; cell process.
 
  
  0.923
CCH86775.1
Flp pilus assembly protein TadC; Function of homologous gene experimentally demonstrated in an other organism; cell process.
 
 
0.901
CCH86668.1
Homologs of previously reported genes of unknown function.
 
  
 0.891
flpF
Pilus assembly protein, ATPase; Function of strongly homologous gene; cell process.
 
 
 0.888
CCH90055.1
ATPase involved in chromosome partitioning; Function of strongly homologous gene; enzyme.
 
 
 0.884
CCH86132.1
Putative conjugal transfer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
 
 
 0.878
flpE
Pilus assembly protein ATPase; Function of strongly homologous gene; cell process.
 
 
 0.873
CCH89223.1
Flp pilus assembly protein, ATPase CpaF; Function of strongly homologous gene; cell process.
 
 
 0.867
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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