Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ftsXCell division protein ftsX homolog; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (294 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE transporter subunit; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.999
CCH90622.1
Cell wall-associated hydrolase, invasion-associated protein; Function of strongly homologous gene; enzyme.
 
 
 0.808
CCH87296.1
Homologs of previously reported genes of unknown function.
   
 
 0.788
CCH87551.1
Homologs of previously reported genes of unknown function.
   
 
 0.788
CCH87863.1
Homologs of previously reported genes of unknown function.
   
 
 0.788
smpB
Trans-translation protein, binds tmRNA and tRNA (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displaci [...]
  
  
 0.722
CCH88935.1
Putative Cell wall-associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 
 0.698
CCH90712.1
Cell wall-associated hydrolase; Function of strongly homologous gene; enzyme.
 
 
 
 0.696
CCH89133.1
Exported protein of unknown function; No homology to any previously reported sequences.
 
 
 
 0.692
CCH87029.1
Cell wall-associated hydrolase; Function of strongly homologous gene; enzyme.
 
 
 
 0.685
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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